Snapshot validation
Scientific diagnostics
Cross-cutting lineage, cohort, additivity, and surrogate checks.
Refresh validation
Validated snapshot retention
If a refresh becomes inconsistent, the application preserves the last validated projection instead of publishing a partial state.
- Animals lost completely during quality control
- 64
- Harmonization lineage checks passed
- true
- Duplicate rows removed
- false
- Missing values preserved
- true
- Hard value thresholds applied
- false
- All SHAP additivity checks passed
- true
- Native TreeSHAP used
- true
- Out-of-fold surrogate RMSE
- 5.26022611755254
Aggregate estimate plot
SHAP additivity errors
Leakage Safe Outer Test ShapUncertainty: Point estimates are shown because this table does not supply matching lower and upper interval columns.
View plotted values in tabular form
| Estimate | Marker | Maximum Absolute Error |
|---|---|---|
| catboost · gt_early | ◆ | 8.88e-15 |
| catboost · gt_late | ✦ | 6.22e-15 |
| lgbm · gt_early | ▲ | 6.22e-15 |
| lgbm · gt_late | ◆ | 6.22e-15 |
| xgb · gt_early | ■ | 1.05e-6 |
| xgb · gt_late | ▲ | 1.10e-6 |
Aggregate estimate plot
Surrogate residual diagnostics
Surrogate AgreementUncertainty: Point estimates are shown because this table does not supply matching lower and upper interval columns.
View plotted values in tabular form
| Estimate | Marker | Gam Mean |
|---|---|---|
| 30.403027684668757 · BMDM | ◆ | 30.039 |
| 25.22981236462949 · IL4 | ✦ | 24.250 |
| 37.45280024426785 · NK1 | ✦ | 34.665 |
| 66.1887539253495 · SHH | ■ | 66.910 |
| 29.765012449600263 · VEGF | ■ | 29.365 |
SHAP additivity validation summary
Summary method: scheme_framework_threshold_aggregate
- Indexed rows
- 6
- Eligible rows
- 30
Showing 1–6 of 6 matching rows
Filters combine with AND. Empty and unreported values sort last.
| nested_cv | catboost | gt_early | 5 | 396 | 26 | 8.88e-15 | 1.18e-15 |
|---|---|---|---|---|---|---|---|
| nested_cv | catboost | gt_late | 5 | 396 | 26 | 6.22e-15 | 1.10e-15 |
| nested_cv | lgbm | gt_early | 5 | 396 | 26 | 6.22e-15 | 5.69e-16 |
| nested_cv | lgbm | gt_late | 5 | 396 | 26 | 6.22e-15 | 1.47e-15 |
| nested_cv | xgb | gt_early | 5 | 396 | 26 | 1.05e-6 | 1.92e-7 |
| nested_cv | xgb | gt_late | 5 | 396 | 26 | 1.10e-6 | 2.67e-7 |
Surrogate residuals by experiment
Summary method: approved_rows
- Indexed rows
- 5
- Eligible rows
- 5
Showing 1–5 of 5 matching rows
Filters combine with AND. Empty and unreported values sort last.
| BMDM | 36 | 12 | 30.403 | 30.039 | 0.946 | 4.326 | 3.069 |
|---|---|---|---|---|---|---|---|
| IL4 | 98 | 45 | 25.230 | 24.250 | 0.905 | 5.108 | 3.781 |
| NK1 | 33 | 12 | 37.453 | 34.665 | 0.848 | 6.723 | 5.242 |
| SHH | 138 | 16 | 66.189 | 66.910 | 0.909 | 5.684 | 4.316 |
| VEGF | 91 | 30 | 29.765 | 29.365 | 0.934 | 4.418 | 3.706 |